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To: arnaud@cirm.univ-mrs.fr, Laurent.Cohen@ceremade.dauphine.fr
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Subject: Merci pour ce tres interessant colloque.
Date: Tue, 18 Nov 1997 18:06:21 +0100
From: Gerard Subsol <Gerard.Subsol@sophia.inria.fr>
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1. Easy to find references that fit best the talk you gave.

@PHDTHESIS{Subsol95.4,
        AUTHOR             = {Subsol, G.},
        MONTH              = dec,
        NOTE               = {In French. Electronic version: http://www.inria.fr/RRRT/TU-0379.html},
        SCHOOL             = {{{\'E}cole Centrale Paris}},
        TITLE              = {{Construction automatique d'atlas anatomiques morphom\'etriques \`a partir d'images m\'edicales tridimensionnelles}},
        YEAR               = {1995},
}

@ARTICLE{Subsol97.2,
        AUTHOR             = {Subsol, G. and Thirion, J. Ph. and Ayache, N.},
        JOURNAL            = {{Traitement du Signal}},
        NUMBER             = {6},
        PAGES              = {651-674},
        TITLE              = {{Une m\'ethode g\'en\'erale pour construire automatiquement des atlas anatomiques morphom\'etriques \`a partir d'images m\'edicales tridimensionnelles~: application \`a un atlas du cr\^ane}},
        VOLUME             = {13},
        YEAR               = {1996},
	NOTE               = {In French.}
}

@ARTICLE{Subsol98,
        AUTHOR             = {Subsol, G. and Thirion, J. Ph. and Ayache, N.},
        JOURNAL            = {{Medical Image Analysis}},
        NOTE               = {Accepted for publication.},
        TITLE              = {{A General Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull Atlas}},
        YEAR               = {1998}
}


@INPROCEEDINGS{Subsol96.2,
        AUTHOR             = {Subsol, G. and Thirion, J. Ph. and Ayache, N.},
        ADDRESS            = {Paris (France)},
        BOOKTITLE          = {{Computer Assisted Radiology}},
        EDITOR             = {Lemke, H. and Inamura, K. and Farman, A. and Vannier, F.},
        MONTH              = jun,
        PAGES              = {339-344},
        TITLE              = {{Some applications of an automatically built 3D morphometric skull atlas}},
        YEAR               = {1996},
}

@INPROCEEDINGS{Subsol96.4,
        AUTHOR             = {Subsol, G. and Thirion, J. Ph. and Ayache, N.},
        ADDRESS            = {Hamburg (Germany)},
        BOOKTITLE          = {{Visualization in Biomedical Computing}},
        EDITOR             = {H\"ohne, K. H. and Kikinis, R.},
        MONTH              = sep,
        PAGES              = {373-382},
        PUBLISHER          = {{Springer}},
        SERIES             = {{Lecture Notes in Computer Science}},
        TITLE              = {{Application of an Automatically Built 3D Morphometric Brain Atlas: Study of Cerebral Ventricle Shape}},
        VOLUME             = {1131},
        YEAR               = {1996},
}

@ARTICLE{Subsol97,
        AUTHOR             = {Subsol, G. and Roberts, N. and Doran, M. and Thirion, J. Ph.},
        JOURNAL            = {{Magnetic Resonance Imaging}},
        NUMBER             = {8},
        PAGES              = {917-927},
        TITLE              = {{Automatic Analysis of Cerebral Atrophy}},
        VOLUME             = {15},
        YEAR               = {1997},
}


2. A web site where the above references, others papers of interest
   or a demo could be found.

http://www.inria.fr/epidaure/personnel/subsol/subsol-eng.html


3. For those who did not send a latex abstract to me and to CIRM, please
do it

\begin{document}

In this talk, we address the new problem of automated
building of morphometric anatomical atlases from volumetric medical
images (X-ray CT or Magnetic Resonance Imaging).

We describe a method composed of four steps. First, we automatically
extract feature lines from the volumetric images. We use "crest
lines" which are a simplified representation of the studied
structure and which are anatomically significant. Then, we have
developed a non-rigid matching algorithm to register sets of lines
extracted from different patients in order to find the common lines
which form the atlas. We then compute their average positions and a
very reduced set of statistical parameters describing their
variation.  

This method has allowed us to build an atlas of crest lines of the
skull from 6 CT-Scans and of the brain from 10 MRI images.

The statistical parameters can be used for several medical
applications: reference database with automatic labeling, normalized
registration, computer assisted therapy planning, morphometric
analysis, computer aided diagnosis and therapy planning. We study,
in particular, a maxillary disease and the deformations of cerebral
lateral ventricles.

\end{document}


======================================================================
     Dr. G�rard Subsol, Ing�nieur Expert, Projet EPIDAURE, INRIA 
 2004 route des Lucioles, BP 93 06902 Sophia Antipolis Cedex, France
       T�l : +33 (0)4 93 65 76 68 - Fax : +33 (0)4 93 65 76 69
      http://www.inria.fr/epidaure/personnel/subsol/subsol.html
======================================================================

